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Kyeong Kyu Kim
Sungkyunkwan University - School of Medicine
Suwon 440-746, Korea
214. Functional and structural changes in the membrane-bound Oacyltransferase family member 7 (MBOAT7) protein.
Jiwon Lee, Amen Shamim, Jongho Park, Jahyun Jang, Ji Hye Kim, Jeongyi Kwon, Jong-Won Kim, Kyeong Kyu Kim, Jeehun Lee
Frontiers in Neurology, section Neurogenetics
213. Analysis of Novel Drug-Resistant Human Cytomegalovirus DNA Polymerase Mutations Reveals the Role of a DNA-Binding Loop in Phosphonoformic Acid Resistance.
Park KR, Kim YE, Shamim A, Gong S, Choi SH, Kim KK, Kim YJ, Ahn JH.
Front Microbiol. 2022 Feb 3;13:771978. doi: 10.3389/fmicb.2022.771978. eCollection 2022.
212. Interaction of Prion Peptides with DNA Structures.
Tandon A, Subramani VK, Kim KK, Park SH.
ACS Omega. 2021 Dec 20;7(1):176-186. doi: 10.1021/acsomega.1c04328. eCollection 2022 Jan 11.
211. Sequence Analysis and Preliminary X-ray Crystallographic Analysis of an Acetylesterase (LgEstI) from Lactococcus garvieae.
Do H, Wang Y, Lee CW, Yoo W, Jeon S, Hwang J, Lee MJ, Kim KK, Kim HW, Lee JH*, Kim TD*.
Crystals 2022, 12(1), 46; https://doi.org/10.3390/cryst12010046
210. Purification and Crystallographic Analysis of a Novel Cold-Active Esterase (HaEst1) from Halocynthiibacter arcticus.
Jeon S, Hwang J, Yoo W, Chang JW, Do H, Kim HW, Kim KK, Lee JH*, Kim TD*
Crystals 2021, 11(2), 170; https://doi.org/10.3390/cryst11020170
209. Roles of Two-Component Systems in Pseudomonas aeruginosa Virulence.
Maria Sultan, Rekha Arya, and Kyeong Kyu Kim
Int. J. Mol. Sci. 2021, 22(22), 12152; https://doi.org/10.3390/ijms222212152
208. Ftsh Sensitizes Methicillin-Resistant Staphylococcus aureus to ¥â-Lactam Antibiotics by Degrading YpfP, a Lipoteichoic Acid Synthesis Enzyme.
Yeo WS, Jeong B, Ullah N, Shah MA, Ali A, Kim KK, Bae T. Antibiotics (Basel). 2021
Oct 1;10(10):1198. doi: 10.3390/antibiotics10101198.
207 AC-motif: a DNA motif containing adenine and cytosine repeat plays a role in gene regulation.
Hur JH, Kang CY, Lee S, Parveen N, Yu J, Shamim A, Yoo W, Ghosh A, Bae S, Park CJ, Kim KK.
Nucleic Acids Res. 2021 Sep 1:gkab728. doi: 10.1093/nar/gkab728
206. The effect of hairpin loop on the structure and gene expression activity of the long-loop G-quadruplex.
Ravichandran S, Razzaq M, Parveen N, Ghosh A, Kim KK.
Nucleic Acids Res. 2021 Aug 27:gkab739. doi: 10.1093/nar/gkab739.
205. An Antibacterial Nanorobotic Approach for the Specific Targeting and Removal of Multiple Drug-Resistant Staphylococcus aureus.
Batool N, Yoon S, Imdad S, Kong M, Kim H, Ryu S, Lee JH, Chaurasia AK, Kim KK.
Small. 2021 Apr 10:e2100257. doi: 10.1002/smll.202100257.
204. Genome-wide analysis of Staphylococcus aureus sequence type 72 isolates provides insights into resistance against antimicrobial agents and virulence potential.
Batool N, Shamim A, Chaurasia AK, Kim KK
Front. Microbiol., 20 January 2021 | https://doi.org/10.3389/fmicb.2020.613800
203. MD-TSPC4: Computational Method for Predicting the Thermal Stability of I-Motif.
Shamim A, Razzaq M, Kim KK
Int. J. Mol. Sci. 2021, 22, 61. https://dx.doi.org/10.3390/ ijms22010061
202. Pontin arginine methylation by CARM1 is crucial for epigenetic regulation of autophagy.
Yu YS, Shin HR, Kim D, Baek SA, Choi SA, Ahn H, Shamim A, Kim J, Kim IS, Kim KK, Won KJ, Baek SH.
Nat Commun. 2020 Dec 8;11(1):6297. doi: 10.1038/s41467-020-20080-9.
201. Draft Genome Sequences of Lysostaphin-Resistant (K07-204) and Lysostaphin-Susceptible (K07-561) Staphylococcus aureus Sequence Type 72 Strains Isolated from Patients in South Korea.
Batool N, Ko KS, Chaurasia AK, Kim KK
Microbiology Resource Announcements 2020 9(49) e1057-20 DOI: 10.1128/MRA.01057-20
200. Molecular Packing Interaction in DNA Crystals.
Shamim A, Parveen N, Subramani VK, Kim KK
Crystals 2020, 10(12), 1093; https://doi.org/10.3390/cryst10121093
199. Functional identification of serine hydroxymethyltransferase as a key gene involved in lysostaphin resistance and virulence potential of Staphylococcus aureus strains.
Batool N, Ko KS, Chaurasia AK, Kim KK
Int. J. Mol. Sci. 2020, 21(23), 9135; https://doi.org/10.3390/ijms21239135 (registering DOI)
198. Sphingosylphosphorylcholine blocks ovariectomy-induced bone loss by suppressing Ca2+ /calmodulin-mediated osteoclast differentiation.
Lee HY, Cho KM, Kim MK, Lee M, Kim H, Choi CY, Kim KK, Park JS, Kim HH, Bae YS.
J Cell Mol Med. 2020 Nov 23. doi: 10.1111/jcmm.16101.
197. Proline Hinged Amphipathic ¥á-Helical Peptide Sensitizes Gram-Negative Bacteria to Various Gram-Positive Antibiotics.
Hyun S, Choi Y, Jo D, Choo S, Park TW, Park SJ, Kim S, Lee S, Park S, Jin SM, Cheon DH, Yoo W, Arya R, Chong YP, Kim KK, Kim YS, Lee Y, Yu J.
J Med Chem. 2020 Nov 18. doi: 10.1021/acs.jmedchem.0c01506.
196. Exosome-Mediated Differentiation of Mouse Embryonic Fibroblasts and Exocrine Cells into ¥â-Like Cells and the Identification of Key miRNAs for Differentiation.
Mandal P, De D, Im DU, Um SH, Kim KK.
Biomedicines. 2020 Nov 9;8(11):E485. doi: 10.3390/biomedicines8110485.
195. Targeted epigenetic modulation using a DNA-based histone deacetylase inhibitor enhances cardiomyogenesis in mouse embryonic stem cells.
Lee JA, An J, Taniguchi J, Kashiwazaki G, Pandian GN, Parveen N, Kang TM, Sugiyama H, De D, Kim KK.
J Cell Physiol. 2020 Nov 8. doi: 10.1002/jcp.30140. Online ahead of print
194. Crystallization and Preliminary X-ray Diffraction Study of a Novel Bacterial Homologue of Mammalian Hormone-Sensitive Lipase (halip1) from Halocynthiibacter arcticus.
Jeon S, Hwang J, Yoo W, Do H, Kim HW, Kim KK , Lee JH, Kim TD
Crystals 2020, 10(11), 963; https://doi.org/10.3390/cryst10110963
193. Identification, characterization, and immobilization of a novel YbfF esterase from Halomonas elongata.
Yoo W, Kim B, Jeon S, Kim KK, Kim TD.
Int J Biol Macromol. 2020 Oct 6;165(Pt A):1139-1148. doi:10.1016/j.ijbiomac.2020.09.247.
192. Improved differentiation of human adipose stem cells to insulin-producing b-like cells using PDFGR kinase inhibitor Tyrphostin9.
Mandal P, De D, Yun K, Kim KK.
Biochem Biophys Res Commun. 2020 Nov 26;533(1):132-138. doi: 10.1016/j.bbrc.2020.08.090. Epub 2020 Sep 12.
191. Biodiesel and flavor compound production using a novel promiscuous cold-adapted SGNH-type lipase (Ha SGNH1) from the psychrophilic bacterium Halocynthiibacter arcticus.
LTHL Le, W Yoo, S Jeon, C Lee, KK Kim, JH Lee, TD Kim
Biotechnology for Biofuels 2020 Mar 16; 13 (1), 1-13
190. Crystallographic Studies of Enzymes.
TD Kim, KK Kim
Crystals 2020, 10 (1), 6
189. New screening system using Twist1 promoter activity identifies dihydrorotenone as a potent drug targeting cancer-associated fibroblasts.
Lee E, Yeo SY, Lee KW, Lee JA, Kim KK, Kim SH.
Sci Rep. 2020 Apr 27;10(1):7058. doi: 10.1038/s41598-020-63996-4.
188. A membrane -bound transcription factor is proteolytically regulated by the 2 AAA+ protease FtsH in Staphylococcus aureus.
Won - Sik Yeo, Chiamara Anokwute, Philip Marcadis, Marcus Levitan, Mahmoud Ahmed, Yeun Bae, Kyeongkyu Kim, Tatiana Kostrominova, Qian Liu, and Taeok Bae
J. Bacteriol.2020, Apr 9; 202(9) doi:10.1128/JB.00019-20
187. Ubiquitin-Specific Protease 21 Promotes Colorectal Cancer Metastasis by Acting as a Fra-1 Deubiquitinase.
Yun SI, Hong HK, Yeo SY, Kim SH, Cho YB, Kim KK. Cancers 2020, Jan 14; 12(1),
207; https://doi.org/10.3390/cancers12010207
186. Characterization and immobilization of a novel SGNH family esterase (LaSGNH1) from Lactobacillus acidophilus NCFM.
Le L, Yoo W, Jeon S, Kim KK and Kim DH
Int. J. Mol. Sci. 2019, Dec 21; 21(1), 91; doi:10.3390/ijms21010091
185. Molecular characterization of a novel family VIII esterase with b-lactamase activity (PsEsta) from paeninacillis sp.
Sena Kwon S, Yoo WK, Kim KK, Kim YO, Kim DH
Biomolecules 2019, 9, 786; doi:10.3390/biom9120786
184. Carboxylic Ester Hydrolases in Bacteria: Active Site, Structure, Function and Application.
Oh C, Kim DH, Kim KK.
Crystals 2019 Nov 14; 9, 597; doi:10.3390/cryst9110597.
183. Molecular characterization of a novel cold-active hormone-sensitive lipase (HaHSL) from halocynthiibacter arcticus.
Le LTHL, Yoo W, Lee C, Wang Y, Jeon S, Kim KK, Lee JH, Kim TD.
Biomolecules. 2019 Nov 5;9(11). pii: E704. doi: 10.3390/biom9110704.
182. Unraveling the G-quadruplex Puzzle: Lessons from Genome-wide and Transcriptome-wide Studies.
Ravichandran S, Ahn JH, Kim KK.
Front Genet. 2019 Oct 18;10:1002. doi: 10.3389/fgene.2019.01002. eCollection 2019. Review.
181. Pneumococcal VncR serotype-specifically regulates capsule polysaccharide synthesis.
Ghosh P, Shah M, Ravichandran S, Park SS, Iqbal H, Choi S, Kim KK, Rhee DK.
Front Microbiol. 2019 Oct 1;10:2279. doi: 10.3389/fmicb.2019.02279. eCollection 2019.
180. Contribution of SLC22A12 on hypouricemia and its clinical significance for screening purposes.
Cha DH, Gee HY, Cachau R, Choi JM, Park D, Jee SH, Ryu S, Kim KK, Won HH, Limou S, Myung W, Winkler CA, Cho SK.
Sci Rep. 2019 Oct 7;9(1):14360. doi: 10.1038/s41598-019-50798-6.
179. Structural and functional characterization of a novel cold-active S-formylglutathione hydrolase (SfSFGH) homolog from Shewanella frigidimarina, a psychrophilic bacterium.
Lee CW, Yoo W, Park SH, Le LTHL, Jeong CS, Ryu BH, Shin SC, Kim HW, Park H, Kim KK, Kim TD, Lee JH.
Microb Cell Fact. 2019 Aug 19;18(1):140. doi: 10.1186/s12934-019-1190-1.
178. A novel enantioselective SGNH family esterase (NmSGNH1) from Neisseria meningitides: Characterization, mutational analysis, and ester synthesis.
Yoo W, Le LTHL, Lee JH, Kim KK, Kim TD.
Biochim Biophys Acta Mol Cell Biol Lipids. 2019 Oct;1864(10):1438-1448. doi: 10.1016/j.bbalip.2019.07.007. Epub 2019 Jul 17.
177. Targeting Mannitol Metabolism as an Alternative Antimicrobial Strategy Based on the Structure-Function Study of Mannitol-1-Phosphate Dehydrogenase in Staphylococcus aureus.
Nguyen T, Kim T, Ta HM, Yeo WS, Choi J, Mizar P, Lee SS, Bae T, Chaurasia AK, Kim KK.
MBio. 2019 Jul 9;10(4). pii: e02660-18. doi: 10.1128/mBio.02660-18.
176. Computational approaches to predict noncanonical DNA.
Parveen N, Shamim A, Cho S, Kim KK.
Current bioinformatics 2019, 14(6), 470-479
175. Identification of a New Z-DNA Inducer Using SYBR Green 1 as a DNA Conformation Sensor.
Hur JH, Lee AR, Yoo W, Lee JH, Kim KK.
FEBS Lett. 2019 Jun 29. doi: 10.1002/1873-3468
174. Characterization, immobilization, and mutagenesis of a novel cold-active acetylesterase (EaAcE) from Exiguobacterium antarcticum B7.
Wang Y, Le LTHL, Yoo W, Lee CW, Kim KK, Lee JH, Kim TD.
Int J Biol Macromol. 2019 Sep 21;136:1042-1051.
173. A Selective Inhibitor of Ubiquitin-Specific Protease 4 Suppresses Colorectal Cancer Progression by Regulating b-catenin Signaling.
Nguyen HH, Kim T, Nguyen T, Hahn MJ, Yun SI, Kim KK.
Cell Physiol Biochem 2019;53(1):157-171. doi: 10.33594/000000127
172. Z-DNA in the genome: from structure to disease.
Ravichandran S, Subramani VK, Kim KK.
Biophys Rev. 2019 Jun;11(3):383-387.
Editorial: Special issue of Biophysical Reviews dedicated to the joint 10th Asian Biophysics Association Symposium and 42nd Australian Society for Biophysics Meeting, Melbourne, Australia, December 2-6, 2018.
Battle AR, Norton RS, Bocking T, Noji H, Kim KK, Nagayama K.
Biophys Rev. 2019 Jun;11(3):245-247. doi: 10.1007/s12551-019-00553-y.
Introduction to the Korean Biophysical Society (KBPS).
Lim HH, Kim KK, Park CS.
Biophys Rev. 2019 Jun;11(3):267-268. doi: 10.1007/s12551-019-00547-w.
171. Suppression of the Ubiquitin Pathway by Small Molecule Binding to Ubiquitin Enhances Doxorubicin Sensitivity of the Cancer Cells.
Nguyen T, Ho M, Kim K, Yun SI, Mizar P, Easton JW, Lee SS, Kim KK.
Molecules. 2019 Mar 19;24(6). pii: E1073. doi: 10.3390/molecules24061073.
170. An alternative enzyme protection assay to overcome the drawbacks of gentamicin protection assay for measuring entry and intracellular survival of Staphylococci.
Kim JH, Chaurasia AK, Batool N, Ko KS, Kim KK.
Infect Immun. 2019 Feb 19. pii: IAI.00119-19. doi: 10.1128/IAI.00119-19.
169. Characterization and mutation anaylsis of a cold-active bacterial hormone-sensitive lipase from Salinisphaera sp. P7-4.
Kim BY, Yoo W, Huong Luu Le LT, Kim KK, Kim HW, Lee JH, Kim YO, Kim TD.
Arch Biochem Biophys. 2019 Jan 14;663:132-142. doi: 10.1016/j.abb.2019.01.010. [Epub ahead of print]
168. NMR Dynamics Study Reveals the Z¥á Domain of Human ADAR1 Associates with and Dissociates from Z-RNA more slowly than Z-DNA.
Lee AR, Hwang J, Hur JH, Ryu KS, Kim KK, Choi BS, Kim NK, Lee JH.
ACS Chem Biol. 2019 Feb 15;14(2):245-255. doi: 10.1021/acschembio.8b00914.
167. Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum.
Yoo W, Lee CW, Kim BY, Huong Luu Le LT, Park SH, Kim HW, Shin SC, Kim KK, Lee JH, Kim TD.
Biochem Biophys Res Commun. 2019 Feb 12;509(3):773-778. doi: 10.1016/j.bbrc.2018.12.183. Epub 2019 Jan 8.
166. Structural Basis for the Enantioselectivity of Esterase Est-Y29 toward (S)-Ketoprofen.
Ngo TD, Oh C, Mizar P, Baek M, Park Ks, Nguyen L, Byeon H, Yoon S, Ryu Y, Ryu BH, Kim TD, Yang JW, Seok C, Lee SS, Kim KK.
ACS catalysis 2019 Jan 4;9(1):755-767. Doi:10.1021/acscatal.8b02797
165. Chemical induced conversion of mouse fibroblasts and human adipose-derived stem cells into skeletal muscle-like cells.
Bansal V, De D, An J, Kang TM, Jeong HJ, Kang JS, Kim KK.
Biomaterials. 2019 Feb;193:30-46. doi: 10.1016/j.biomaterials.2018.11.037
164. Chemical-induced formation of BZ-junction with base extrusion.
Subramani VK, Ravichandran S, Bansal V, Kim KK.
Biochem Biophys Res Commun. 2019 Jan 22;508(4):1215-1220. doi: 10.1016/j.bbrc.2018.12.045.
163. Total synthesis of Xanthoangelol B and its various fragments: towards inhibition of virulence factor production of Staphylococcus aureus.
Mizar P, Arya R, Kim T, Cha S, Ryu KS, Yeo WS, Bae T, Kim DW, Park KH, Kim KK, Lee SS.
J Med Chem. 2018 Nov 2. doi: 10.1021/acs.jmedchem.8b01012. [Epub ahead of print]
162. Crystal structure and functional characterization of a cold-active acetyl xylan esterase (PbAcE) from psychrophilic soil microbe Paenibacillus sp.
Park SH, Yoo W, Lee CW, Jeong CS, Shin SC, Kim HW, Park H, Kim KK, Kim TD, Lee JH.
PLoS One. 2018 Oct 31;13(10):e0206260. doi: 10.1371/journal.pone.0206260. eCollection 2018.
161. Discovery of natural compounds promoting cardiomyocyte differentiation.
Lee JA, An J, Kang TM, De D, Kim KK.
Stem Cells Dev. 2019 Jan 1;28(1):13-27. doi: 10.1089/scd.2018.0153.
160. Modulating ¥á-synuclein fibril formation using DNA tetrahedron nanostructures.
Yoo WK, Ryu BH, Kim KR, Wang Y, Le LTHL, Lee JH, Kim KK, Toth G, Ahn DR, Doohun Kim T.
Biochim Biophys Acta Gen Subj. 2019 Jan;1863(1):73-81. doi: 10.1016/j.bbagen.2018.09.025.
159. Genome-wide analysis of regulatory G-quadruplexes affecting gene expression in human cytomegalovirus.
Ravichandran S, Kim YE, Bansal V, Ghosh A, Hur J, Subramani VK, Pradhan S, Lee MK, Kim KK, Ahn JH.
PLoS Pathog. 2018 Sep 28;14(9):e1007334. doi: 10.1371/journal.ppat.1007334.
158. Sequence preference and structural heterogeneity of BZ junctions.
Kim D, Hur J, Han JH, Ha SC, Shin D, Lee S, Park S, Sugiyama H, Kim KK.
Nucleic Acids Res. 2018 Nov 2;46(19):10504-10513. doi: 10.1093/nar/gky784.
157. Identification of 2',4'-Dihydroxychalcone as an antivirulence agent targeting HlyU, a master virulence regulator in Vibrio vulnificus.
Imdad S, Batool N, Pradhan S, Chaurasia AK, Kim KK.
Molecules. 2018 Jun 20;23(6). pii: E1492. doi: 10.3390/molecules23061492.\
156. Identification and Validation of an Antivirulence Agent Targeting HlyU-Regulated.
Virulence in Vibrio vulnificus. Imdad S, Chaurasia, A.K., Kim KK
Front Cell Infect Microbiol. 2018 May 11;8:152. doi: 10.3389/fcimb.2018.00152. eCollection 2018
155. The FDA-approved anti-cancer drugs, streptozotocin and floxuridine, reduce the virulence of Staphylococcus aureus.
Yeo WS, Arya R, Kim KK, Jeong H, Cho KH, Bae T
Sci Rep. 2018 Feb 6;8(1):2521. doi: 10.1038/s41598-018-20617-5.
154. Identification and Crystallographic Analysis of a New Carbohydrate Acetylesterase (SmAcE1) from Sinorhizobium meliloti.
Changsuk Oh, Bum Han Ryu, Wanki Yoo, Duy Duc Nguyen, Truc Kim, Sung-Chul Ha, T. Doohun Kim, and Kyeong Kyu Kim
Crystals 2018, Jan; doi:10.3390/cryst8010012
153. Identification, characterization, immobilization, and mutational analysis of a novel acetylesterase with industrial potential (LaAcE) from Lactobacillus acidophilus.
Wang Y, Ryu BH, Yoo W, Lee CW, Kim KK, Lee JH, Kim TD.
Biochim Biophys Acta. 2018 Jan;1862(1):197-210. doi: 10.1016/j.bbagen.2017.10.008. Epub 2017 Oct 16.
152. Small molecule-induced cellular conversion.
De D, Halder D, Shin I, Kim KK.
Chem Soc Rev. 2017 Oct 16;46(20):6241-6254. doi: 10.1039/c7cs00330g.
151. A synthetic DNA-binding inhibitor of SOX2 guides human induced pluripotent stem cells to differentiate into cardiac mesoderm.
Taniguchi J, Pandian GN, Hidaka T, Hashiya K, Bando T, Kim KK, Sugiyama H.
Nucleic Acids Res. 2017 Sep 19;45(16):9219-9228. doi: 10.1093/nar/gkx693.
150. Ubiquitin-specific protease 4 (USP4) suppresses myoblast differentiation in a catalytic-independent manner.
Cellular signaling. 2017 in press
149. Characterization of a novel SGNH-type esterase from Lactobacillus plantarum.
Kim Y, Ryu BH, Kim J, Yoo W, An DR, Kim BY, Kwon S, Lee S, Wang Y, Kim KK, Kim TD.
Int J Biol Macromol. 2017 Mar;96:560-568. doi: 10.1016/j.ijbiomac.2016.12.061.
148. "Identification and Crystallization of Penicillin-Binding Protein/¥â-Lactamase Homolog (Rp46) from Ruegeria Pomeroyi
Ryu BH, Ngo TD, Yoo W, Kim KK, Kim TD
Crystals 2017, 29 December 2016 7(1), 6; doi:10.3390/cryst7010006
147. Structural and functional study of ChuY from Escherichia coli strain CFT073.
Kim H, Chaurasia AK, Kim T, Choi J, Ha SC, Kim D, Kim KK.
Biochem Biophys Res Commun. 2016 Dec 2. pii: S0006-291X(16)32052-6. doi: 10.1016/j.bbrc.2016.12.008. [Epub ahead of print]
146. The mutational landscape of ocular marginal zone lymphoma identifies frequent alterations in TNFAIP3 followed by mutations in TBL1XR1 and CREBBP.
Jung H, Yoo HY, Lee SH, Shin S, Kim SC, Lee S, Joung JG, Nam JY, Ryu D, Yun JW, Choi
JK, Ghosh A, Kim KK, Kim SJ, Kim WS, Park WY, Ko YH.
Oncotarget. 2017 Jan 31. doi: 10.18632/oncotarget.14928. [Epub ahead of print]
145. Biochemical and Structural Analysis of a Novel Esterase from Caulobacter crescentus related to Penicillin-Binding Protein (PBP).
Ryu BH,?Ngo TD,?Yoo W,?Lee S,?Kim BY,?Lee E,?Kim KK,?Kim TD
Sci Rep. 2016 2016 dec 1: 6(37978)
144. Bioinorganic Nanohybrid Catalyst for Multistep Synthesis of Acetaminophen, an Analgesic.
Boi Hoa San, Subramaniyam Ravichandran, Kwang-su Park, Vinod Kumar Subramani, and Kyeong Kyu Kim.
ACS Appl. Mater. Interfaces.?2016,?8?(44), pp 30058?30065
143. An ubiquitin-binding molecule can work as an inhibitor of ubiquitin processing enzymes and ubiquitin receptors.
Nguyen T, Ho M, Ghosh A, Kim T, Yun SI, Lee SS, Kim KK.
Biochem Biophys Res Commun. 2016 Oct 7;479(1):33-9. doi: 10.1016/j.bbrc.2016.09.010. Epub 2016 Sep 7.
142. Coupling of radiofrequency with magnetic nanoparticles treatment as an alternative physical antibacterial strategy against multiple drug resistant bacteria.
Chaurasia AK, Thorat ND, Tandon A, Kim JH, Park SH, Kim KK.
Sci Rep. 2016 Sep 27;6:33662. doi: 10.1038/srep33662.
141. Structural studies on the extracellular domain of sensor histidine kinase YycG from Staphylococcus aureus and its functional implications.
Kim T, Choi J, Lee S, Yeo KJ, Cheong HK, Kim KK.
J Mol Biol. 2016 Jul 4. pii: S0022-2836(16)30241-8. doi: 10.1016/j.jmb.2016.06.019. [Epub ahead of print]
140. Structural and functional studies of a large winged Z-DNA binding domain of Danio rerio protein kinase PKZ.
Subramani VK, Kim D, Yun K, Kim KK.
FEBS Lett. 2016 Jul;590(14):2275-85. doi: 10.1002/1873-3468.12238.
139. Examining cooperative binding of Sox2 on DC5 regulatory element upon complex formation with Pax6 through excess electron transfer assay.
Saha A, Kizaki S, De D, Endo M, Kim KK*, Sugiyama H*
Nucleic Acids Res. 2016 Aug 19;44(14):e125. doi: 10.1093/nar/gkw478
138. Structural and Biochemical Characterization of an Octameric Carbohydrate
Acetylesterase from Sinorhizobium meliloti.
Oh C, Ryu BH, An DR, Nguyen DD, Yoo W, Kim T, Ngo TD, Kim HS, Kim KK, Kim TD.
FEBS Lett. 2016 2016 Apr;590(8):1242-52
137. Design of a RANK-mimetic peptide inhibitor of osteoclastogenesis with enhanced RANKL-binding affinity.
Hur J, Ghosh A, Kim K, Ta HM, Kim H, Kim N, Hwang HY, Kim KK.
Mol Cells. 2016 Apr 30;39(4):316-21
136. Ubiquitin-specific protease 4 controls metastatic potential through -catenin stabilization in brain metastatic lung adenocarcinoma.
Hwang SJ, Lee HW, Kim HR, Lee H, Shin CH, Yun SI, Lee DH, Kim DH, Kim KK, Joo KM, Kim HH.
Sci Rep. 2016 Feb 17;6:21596. doi: 10.1038/srep21596.
135. Solution structure of the Z-DNA binding domain of PKR-like protein kinase
(PKZ) from Carassius auratus and quantitative analyses of the intermediate complex during B?Z transition.
Lee AR, Park CJ, Cheong HK, Ryu KS, Park JW, Kwon MY, Lee J, Kim KK, Choi BS, Lee JH.
Nucleic Acids Res. 2016 Apr 7;44(6):2936-48
134. Photocurrent enhancement of SiNW-FETs by integrating protein-shelled CdSe quantum dots.
Moh SH, Kulkarni A, San BH, Lee JH, Kim D, Park KS, Lee MH, Kim T, Kim KK
Nanoscale, 2016
133. Combining suppression of stemness with lineage-specific
induction leads to selective conversion of pluripotent cells
into functional neurons.
Halder D, Chang GE, De D, Cheong E, Kim KK, Shin I
Chemistry and Biology 2015
132. Preparation of cobalt nanoparticles from polymorphic
bacterialtemplates: A novel platform for biocatalysis.
Jang E, Shim HW, Ryu BH, An DR, Yoo WK, Kim KK, Kim DW,
Kim TD
Int J Biol Macromol. 2015 Sep 7;81:747-753
131. Crystal structure analysis of c4763, a uropathogenic
Escherichia coli-specific protein.
Kim H, Choi J, Kim D, Kim KK
Acta Crystallogr F Struct Biol Commun. 2015 Aug;71(Pt 8):1042-7
130. Ubiquitin specific protease 4 positively regulates
the WNT/?catenin
signaling in colorectal cancer.
Yun SI, Kim HH, Yoon JH, Park WS, Hahn MJ, Kim HC,
Chung CH, Kim KK
Mol Oncol. 2015 Nov;9(9):1834-51
129. Structural basis for the substrate selectivity of a
HAD phosphatase from Thermococcus onnurineus NA1.
Ngo TD, Van Le B, Subramani VK, Thi Nguyen CM, Lee HS,
Cho Y, Kim KK, Hwang HY
Biochem Biophys Res Commun. 2015 May 22;461(1):122-7
128. Combining Protein-Shelled Platinum Nanoparticles with
Graphene to Build a Bionanohybrid Capacitor.
San BH, Kim JA, Kulkarni A, Moh SH, Dugasani SR,
Subramani VK, Thorat ND, Lee HH,Park SH, Kim T, Kim KK
ACS Nano. 2014 Dec 23;8(12):12120-9
127. Structural and biochemical characterization of a carbohydrate
acetylesterase from Sinorhizobium meliloti 1021.
Kim K, Ryu BH, Kim SS, An DR, Ngo TD, Pandian R, Kim KK, Kim TD
FEBS Lett. 2015 Jan 2;589(1):117-22
126. Crystallographic analysis and biochemical applications of
a novel penicillin-binding protein/b-lactamase homologue from
a metagenomic library.
Ngo TD, Ryu BH, Ju H, Jang E, Kim KK, Kim TD
Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2455-2466
125. Interaction of TIF-90 and Filamin A in the Regulation of rRNA
Synthesis in Leukemic Cells.
Nguyen LX, Chan SM, Ngo TD, Raval A, Kim KK, Majeti R, Mitchell BS
Blood. 2014 Jul 24;124(4):579-89
124. Novel Interaction of the Z-DNA Binding Domain of Human ADAR1 with the
Oncogenic c-Myc Promoter G-Quadruplex.
Kang HJ, Le TV, Kim K, Hur J, Kim KK, Park HJ
J Mol Biol. 2014 Jul 15;426(14):2594-604
123. Structural and kinetic bases for the metal preference of the M18
aminopeptidase from Pseudomonas aeruginosa.
Nguyen DD, Pandian R, Kim D, Ha SC, Yoon HJ, Kim KS, Yun KH,
Kim JH, Kim KK
Biochem Biophys Res Commun. 2014 Apr 25;447(1):101-7
122. Distinct Rayleigh Scattering from Hot Spot Mutant p53 Proteins
Reveals Cancer Cells.
Jun HJ, Nguyen AH, Kim YH, Park KH, Kim D, Kim KK, Sim SJ
Small. 2014 Jul;10(14):2954-62
121. Single molecule visualization and characterization of Sox2-Pax6
complex formation on a regulatory DNA element using a DNA origami frame.
Yamamoto S, De D, Hidaka K, Kim KK, Endo M, Sugiyama H
Nano Lett. 2014 May 14;14(5):2286-92
doi: 10.1021/nl4044949. Epub 2014 Apr 4
120. Radiofrequency treatment enhances the catalytic function of an
immobilized nanobiohybrid catalyst.
San BH, Ha EJ, Paik HJ, Kim KK
Nanoscale. 2014 Jun 7;6(11):6009-17
doi: 10.1039/c4nr00407h. Epub 2014 Apr 29
119. P42 Ebp1 regulates the proteasomal degradation of the p85
regulatory subunit of PI3K by recruiting a chaperone-E3 ligase
complex HSP70/CHIP.
Ko HR, Kim CK, Lee SB, Song J, Lee KH, Kim KK, Park KW, Cho SW,
Ahn JY
Cell Death Dis. 2014 Mar 20;5:e1131. doi: 10.1038/cddis.2014.79
118. Crystallization and preliminary X-ray analysis of a novel type of
lipolytic hydrolase from Bacillus licheniformis.
Ju H, Pandian R, Kim K, Kim KK, Kim TD
Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):473-5
117. Distinct Z-DNA binding mode of a PKR-like protein kinase containing
a Z-DNA binding domain (PKZ).
Kim D, Hur J, Park K, Bae S, Shin D, Ha SC, Hwang HY, Hohng S, Lee JH,
Lee S, Kim YG, Kim KK
Nucleic Acids Res. 2014 May 1;42(9):5937-48
doi: 10.1093/nar/gku189. Epub 2014 Mar 20
116. Structural insights into the molecular mechanism of
Escherichia coli SdiA, a quorum-sensing receptor.
Kim T, Duong T, Wu CA, Choi J, Lan N, Kang SW, Lokanath NK,
Shin D, Hwang HY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):694-707
115. Structural and functional characterization of an Isd-type
haem-degradation enzyme from Listeria monocytogenes.
Duong T, Park K, Kim T, Kang SW, Hahn MJ, Hwang HY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2014 Mar;70(Pt 3):615-26
114. Crystallization and preliminary X-ray analysis of a highly
stable novel SGNH hydrolase (Est24) from Sinorhizobium meliloti.
Ryu BH, Nguyen DD, Ngo TD, Oh C, Pandian R, Kim KK, Kim TD
Acta Crystallogr F Struct Biol Commun. 2014 Feb 1;70(Pt 2):193-5
doi: 10.1107/S2053230X13033918. Epub 2014 Jan 21
113. Inhibition of master transcription factors in pluripotent
cells induces early stage differentiation.
De D, Jeong MH, Leem YE, Svergun DI, Wemmer DE, Kang JS, Kim KK,
Kim SH
Proc Natl Acad Sci U S A. 2014 Feb 14; 111(5): 1778-83
112. Descriptor-Based Profile Analysis of Kinase Inhibitors to Predict
Inhibitory Activity and to Grasp Kinase Selectivity.
Park H, Kim KK, Kim CH, Shin JM, No KT
Bull. Korean Chem. Soc. 2013 Sep;34(9):2680-2684
111. Energetics of Z-DNA Binding Protein-Mediated Helicity Reversals in
DNA, RNA, and DNA-RNA Duplexes.
Bae S, Kim Y, Kim D, Kim KK, Kim YG*, Hohng S
J. Phys. Chem. B, 2013 Oct 10, 117 (44): 13866?3871
110. Structure-based elucidation of the regulatory mechanism for
aminopeptidase activity.
Ta HM, Bae S, Han S, Song J, Ahn TK, Hohng S, Lee S, Kim KK.
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1738-47
109. Structural and functional analyses of a bacterial homologue of
hormone-sensitive lipase from a metagenomic library.
Ngo TD, Ryu BH, Ju H, Jang E, Park K, Kim KK, Kim TD.
Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1726-37
108. Investigation of the heating properties of platinum nanoparticles
under a radiofrequency current
San BH, Moh SH, Kim KK
Int J Hyperthermia. 2013;29(2):99-105
107. Synthesis and electric characterization of protein-shelled CdSe
quantum dots.
Moh SH, San BH, Kulkarni A, Kim T, Kim KK
J. Mater. Chem.C, 2013 Mar 7, 1 (13), 2412 - 2415
106. Size-controlled synthesis and characterization of CoPt nanoparticles
using protein shells.
San BH, Lee S, Moh SH, Park JG, Lee JH, Hwang HY, Kim KK
J. Mater. Chem.B, 2013 Mar 7; 1(10) 1453-1460
105. DNA sensing-independent inhibition of herpes simplex virus 1
replication by DAI/ZBP1.
Pham TH, Kwon KM, Kim YE, Kim KK, Ahn JH
J Virol. 2013 Mar;87(6):3076-86
104. Characterization, Crystallization, and Preliminary X-ray
Diffraction Analysis of a New (S)-specific Esterase (pfEstA) from
Pseudomonas fluorescens KCTC 1767: Enantioselectivity for Industrial
Applications
Kim S, Ngo TD, Kim KK, Kim TD
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Nov (in
press)
103. One-step immobilization and purification of his-tagged enzyme
using poly (2-acetamidoacrylic acid) hydrogel
Ha EJ,Kim KK, Park HS, Lee SG, Lee JO, An SSA, Paik HJ
Macormolecular Research 2012 Oct, . [Epub ahead of print]
102. EZH2 Generates a Methyl Degron that Is Recognized by the
DCAF1/DDB1/CUL4 E3 Ubiquitin Ligase Complex.
Lee JM, Lee JS, Kim H, Kim K, Park H, Kim JY, Lee SH, Kim IS, Kim J,
Lee M, Chung CH, Seo SB, Yoon JB, Ko E, Noh DY, Kim KI, Kim KK, Baek
SH.
Mol Cell. 2012 Oct 9. pii: S1097-2765(12)00780-0. doi:
10.1016/j.molcel.2012.09.004.
101. The crystal structure of the periplasmic domain of vibrio
parahaemolyticus CpxA. Kwon E, Kim DY, Ngo TD, Gross CA, Gross JD,
Kim KK.
Protein Sci. 2012 Sep;21(9):1334-43
100. Structures of Staphylococcus aureus peptide deformylase in
complex with two classes of new inhibitors.
Lee SJ, Lee SJ, Lee SK, Yoon HJ, Lee HH, Kim KK, Lee BJ, Lee BI, Suh
SW.
Acta Crystallogr D Biol Crystallogr. 2012 Jul;68(Pt 7):784-93.
100. Identification, crystallization and preliminary X-ray
diffraction analysis of esterase A from Caulobacter crescentus CB15,
a family VIII lipolytic enzyme.
Ryu BH, Ngo TD, Jang E, Kim S, Ju H, Kim KK, Kim TD.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 May 1;68(Pt
5):560-4. Epub 2012 Apr 21.
98. The effect of protein shells on the antioxidant activity of
protein-encapsulated platinum nanoparticles
San BH, Moh SH, Kim KK.
J. Mater. Chem., 2012 Feb 2:,22(5): 1774-1780
97. Characterization, amyloid formation, and immobilization of a
novel SGNH hydrolase from Listeria innocua 11262.
Kim S, Bae SY, Kim SJ, Ngo TD, Kim KK, Kim TD.
Int J Biol Macromol. 2012 Jan 1;50(1):103-11
96. Crystal Structure of the LG3 Domain of Endorepellin, an
Angiogenesis Inhibitor
Le VB, Kim H, Choi JK, Kim JH, Hahn MJ, Lee C, Kim KK, Hwang HY
(* co-correspondence)
Journal of Molecular Biology 2011 Nov 25;414(2):231-42
95. Amyloid formation using 1-butyl-3-methyl-imidazolium-based ionic
liquids.
Bae SY, Kim S, Lee BY, Kim KK, Kim TD.
Anal Biochem. 2011 Dec 15;419(2):354-6. Epub 2011 Aug 10
94. Platinum nanoparticles encapsulated by aminopeptidase: a
multifunctional bioinorganic nanohybrid catalyst
San BH, Kim S, Moh SH, Lee H, Jung DY, Kim KK.
Angew Chem Int Ed Engl. 2011 Dec 9;50(50):11924-9
93. Crystallization and diffraction analysis of Sm23: an SGNH-family
arylesterase from Sinorhizobium meliloti 1021
Hwang H, Kim S, Park S, Ngo TD, Kim KK*, Kim TD* (*
co-correspondence)
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 May 1;67(Pt
5):572-4.
92. Solution structure of the Zβ domain of human DAI and its binding
modes to B- and Z-DNAs
Kim K, Khayrutdinov BI, Lee CK, Cheong HK, Kang SW, Park H, Lee H,
Kim YG, Rich A, Kim KK*, Jeon YH* (* co-correspondence)
Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6921-6. Epub 2011 Apr
6
91. The Zβ domain of human DAI binds to Z-DNA via a novel B–Z
transition pathway ?Kim HE, Ahn HC, Lee YM, Lee EH, Seo YJ, Kim YG,
Kim KK, Choi BS, Lee JH
FEBS Lett. 2011 Mar 9;585(5):772-8. Epub 2011 Feb 4.
90. Intrinsic Z-DNA Is Stabilized by the Conformational Selection
Mechanism of Z-DNA-Binding Proteins.
Bae S, Kim D, Kim KK*, Kim YG*, Hohng S* (* co-correspondence)
J Am Chem Soc. 2011 Feb 2;133(4):668-71.
89. Structure-based development of of a receptor activator of
nuclear factor-κB ligand (RANKL)RANKL inhibitor peptide and
molecular basis for osteopetrosis. Ta HM, Nguyen GT, Jin HM, Choi J,
Park H, Kim N, Hwang HY, Kim KK.
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20281-6. Epub 2010 Nov
8.
88. The crystal structure of Escherichia coli Spy.
Kwon E, Kim DY, Gross CA, Gross JD, Kim KK.
Protein Sci. 2010 Nov;19(11):2252-9.
87. Transition between B-DNA and Z-DNA: free energy landscape for
the B-Z junction propagation. Lee J, Kim YG, Kim KK, Seok C.
J Phys Chem B. 2010 Aug 5;114(30):9872-81.
86. Structural basis for the negative regulation of bacterial stress
response by RseB
Kim DY, Kwon EJ, Choi J, Hwang HY, Kim KK
Protein Sci. 2010 Jun;19(6):1258-63.
85. Structural basis for the reaction mechanism of UDP-glucose
pyrophosphorylase.
Kim H, Choi J, Kim T, Lokanath NK, Ha SC, Suh SW, Hwang HY, Kim KK
Mol. Cells. 2010 Apr;29(4):397-405.
84. Crystal structure of Streptococcus pneumoniae Sp1610, a putative
tRNA methyltransferase, in complex with S-adenosyl-L-methionine (p
NA)
Minh Ta H, Kim KK
Protein Sci. 2010 Mar;19(3):617-24.
83. Z-DNA Binding Proteins as Targets for Structure-Based Virtual
Screening.
Kim D, Lee YH, Hwang HY, Kim KK*, Park HJ * (* co-correspondence)
Curr Drug Targets. 2010 Mar; 11(3):335-44.
82. Structural basis for the substrate specificity of PepA from
Streptococcus pneumoniae, a dodecameric tetrahedral protease.
Kim D, San BH, Moh SH, Park H, Kim DY, Lee S, Kim KK.
Biochem Biophys Res Commun. 2010 Jan 1;391(1):431-6.
81. Enhanced SUMOylation of proteins containing a SUMO-interacting
motif by SUMO-Ubc9 fusion.
Kim ET, Kim KK, Matunis MJ, Ahn JH.
Biochem Biophys Res Commun. 2009 Oct 9;388(1):41-5. Epub 2009 Jul
25.
80. NMR spectroscopic elucidation of the B-Z transition of a DNA
double helix induced by the Z alpha domain of human ADAR1.
Kang YM, Bang J, Lee EH, Ahn HC, Seo YJ, Kim KK, Kim YG, Choi BS,
Lee JH.
J Am Chem Soc. 2009 Aug 19;131(32):11485-91.
79. Base extrusion is found at helical junctions between right- and
left-handed forms of DNA and RNA.
Kim D, Reddy S, Kim DY, Rich A, Lee S, Kim KK*, Kim YG* (*
co-correspondence)
Nucleic Acids Res. 2009 Jul;37(13):4353-59. Epub 2008 May 21
78. Disulfide bond as a structural determinant of prion protein
membrane insertion.
Shin JY, Shin JI, Kim JS, Yang YS, Shin YK, Kim KK, Lee S, Kweon DH.
Mol Cells. 2009 Jun;27(6):673-80. Epub 2009 Jun 12.
77. Structural and functional characterization of soluble endoglin
receptor.
Van Le B, Franke D, Svergun DI, Han T, Hwang HY, Kim KK.
Biochem Biophys Res Commun. 2009 Jun 12;383(4):386-91. Epub 2009 Mar
5.
76. Purification, Crystallization, and Preliminary Crystallographic
Analysis of Est-Y29: A Novel Oligomeric -Lactamase.
Kim S, Joo S, Yoon S, Kim S, Moon J, Ryu Y, Kim KK*,Kim TD* (*
co-correspondence)
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt
3):310-2. Epub 2009 Feb 26.
75. Crystallization and preliminary X-ray crystallographic studies
of the Z-DNA binding domain of a PKR-like kinase (PKZ) in complex
with Z-DNA
Kim D, Hwang HY, Kim YG, Kim KK.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Mar 1;65(Pt
3):267-70. Epub 2009 Feb 26.
74. Analyzing the interaction of RseA and RseB, the two negative
regulators of the E envelope stress response, using a combined
bioinformatic and experimental strategy.
Ahuja N, Korkin D, Chaba R, Cezairliyan BO, Sauer RT, Kim KK, Gross
CA
J Biol Chem. 2009 Feb 20;284(8):5403-13. Epub 2008 Dec 222008
73. The structures of non-CG-repeat Z-DNAs co-crystallized with the
Z-DNA binding domain, hZADAR1
HA SC, Choi J, Hwang HY, Rich A, Kim YG, Kim KK
Nucleic Acids Res. 2009 Feb;37(2):629-37. Epub 2008 Dec 11.
72. The crystal structure of the second Z-DNA binding domain of
human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding
mode to Z-DNA.
HA SC, Kim DY, Hwang HY, Rich A, Kim YG, Kim KK
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20671-6.
71. The structural basis for the activation and peptide recognition
of bacterial ClpP
Kim DY, Kim KK
Journal of Molecular Biology 2008 June 13; 379(4): 760-771.
70. Solution structures of RseA and its complex with RseB.
Jin KS, Kim DY, Rho Y, Le VB, Kwon E, Kim KK*Ree M* (*
co-correspondence)
Journal of Synchrotron Radiation 2008 May 1; 15(3): 219-222.
69. The mechanism of the temperature-induced bacterial HtrA
activation
Kim DY, Kwon E, Shin YK, Kweon DH*, Kim KK* (*co-correspondence)
Journal of Molecular Biology 2008 Mar 21;377(2): 410-420
68. The crystal structure of guamerin in complex with chymotrypsin
and the modification for an elastase-specific inhibitor
Kim H, Chu TTT , Kim DY, Nguyuen CMT, Kim DR, Lee JL, Hahn MJ, Kim
KK
Journal of Molecular Biology 2008 Feb 8;376(1): 184-192
67. Crystallization and Preliminary X-ray Studies of TON_0559, a
Putative Member of the Haloacid Dehalogenase (HAD) Superfamily from
Thermococcus onnurineus NA1
Nguyen CMT, Lee HS, Cho Y, Lee JH, Ha SC, Hwang HY, Kim KK
Protein and Peptide letter 2008 Feb 1; 15(2) 235-237.
66. Crystallization and preliminary X-ray studies of SdiA from
Escherichia coli
Wu C, Lokanath NK, Kim DY, Nguyen L, Kim KK
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2008 Jan
1;64(Pt 1):19-21.
65. Characterization of DNA binding activity of Zalpha domains from
poxviruses and importance of the beta-wing regions in converting
B-DNA to Z-DNA.
Quyen DV, HA SC, Lowenhaupt K, Rich A, Kim KK*, Kim YG* (*
co-correspondence)
Nucleic Acid Research 2007;35(22):7714-20. Epub 2007 Nov 5.
64. Binding surface in Zβ domain from human ZBP1 does not require
conserved proline residues for Z-DNA binding and B-to-Z-DNA
conversion activities.
Quyen DV, Ha SC, Kim DY, Lee S, Kim KK*, Kim YG* (*
co-correspondence)
Bull. Korean Chem. Soc. 2007 Dec 20; 28(12) 1039-1042.
63. Crystallization and preliminary X-ray studies of TO1713 from
Thermococcus onnurineus NA1, a putative member of the haloacid
dehalogenase (HAD) superfamily.
Le BV, Lee HS, Cho Y, Kang SG, Kim DY, Kim YG, Kim KK
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Dec
1;63(Pt 12):1048-50.
62. Crystal structure of the mouse p53 core domain in zinc-free
state
Kwon E, Kim DY, Suh SW, Kim KK.
Proteins 2008 Jan 1;70(1):280-283 [Epub ahead of print]
61. Purification, crystallization and preliminary crystallographic
analysis of Est25: a ketoprofen-specific hormone-sensitive lipase.
Kim S, Joo S, Yoon HC, Ryu Y, Kim KK*, Kim TD* (* co-correspondence)
Acta Crystallograph Sect F Struct Biol Cryst Commun. 2007 Jul
1;63(Pt 7):579-81.
60. Crystal structure of RseB and a model of its binding mode to
RseA
Kim DY, Jin KS, Kwon E, Ree M, Kim KK.
Proc Natl Acad Sci U S A. 2007 May 22;104(21):8779-84. Epub 2007 May
11.
59. Identification of novel ligands for the Z-DNA binding protein by
structure-based virtual screening.
Kim YG, Thai KM, Song J, Kim KK, Park HJ
Chem. Pharm. Bull Feb 2007; 55(2):340-342.
58. A peptide with alternating lysines can act as a highly specific
Z-DNA binding domain.
Kim YG, Park HJ, Kim KK, Lowenhaupt, K, Rich A.
Nucleic Acids Research 2006;34(17):4937-42. Epub 2006 Sep 18
57. Intracellular localization of human ZBP1: Differential
regulation by the Z-DNA binding domain, Zalpha, in splice variants.
Pham HT, Park MY, Kim KK, Kim YG, Ahn JH.
Biochem Biophys Res Commun. 2006 Sep 15;348(1):145-52.
56. Crystal Structure of Visfatin/Pre-B Cell Colony-enhancing Factor
1/Nicotinamide Phosphoribosyltransferase, Free and in Complex with
the Anti-cancer Agent FK-866.
Kim MK, Lee JH, Kim H, Park SJ, Kim SH, Kang GB, Lee YS, Kim JB, Kim
KK, Suh SW, Eom SH.
J Mol Biol. 2006 Sep 8;362(1):66-77.
55. Sequence-dependent kinetic behavior of protein-induced B- to
Z-DNA transition
Van Quyen D, Kim KK*, Kim YG*(*co-correspondence)
Bull. Korean Chem. Soc. 2006 July 20;27(Pt 7):1459-64.
54. Biochemical characterization and preliminary X-ray
crystallographic study of the domains of human ZBP1 bound to
left-handed Z-DNA
Ha SC, Van Quyen D, Hwang HY, Oh DB, Brown BA 2nd, Lee SM, Park HJ,
Ahn JH, Kim KK*, Kim YG*(*co-correspondence).
Biochimica et Biophysica Acta. 2006 Feb;1764(2):320-3.
53. Structure of Inorganic Pyrophosphatase from Helicobacter pylori
Wu CA, Lokanath NK, Kim DY, Park HJ, Hwang H-Y, Suh SW, Kim KK
Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1459-64.
52. Crystal Structure of a B-DNA-Z-DNA junction Reveals Two Extruded
Bases. Ha SC, Lowenhaupt K, Rich A, Kim YG*, Kim KK*
(co-correspondence)
Nature. 2005 Oct 20;437(7062):1183-6.
51. Structure and function of HtrA family proteins, the key players
in protein quality control.
Kim DY, Kim KK.
J Biochem Mol Biol. 2005 May 31;38(3):266-74.
50. Crystallization and preliminary X-ray crystallographic study of
the viral Za domain bound to left-handed Z-DNA
Ha SC, Oh DB, Kim KK* and Kim YG*.(* co-correspondence)
Protein and Peptide Letter 2005 May; 12(4): 391-393.
49. The target of RNAIII-activating protein(TRAP) from
Staphylococcus aureus: purification, crystallization and preliminary
X-ray analysis
Han Y-H, Kim Y-G, Kim DY, Ha SC, Lokanath NK, Kim KK
Biochimica et Biophysica Acta. 2005 Apr 15;1748(1):134-6.
48. Osmotin is a homolog of mammalian adiponectin and controls
apoptosis in yeast through a homolog of mammalian adiponectin
receptor.
Narasimhan ML, Coca MA, Jin J, Tamauchi T, Ito Y, Kadowaki T, Kim
KK, Pardo JM, Damsz B, Hasegawa PM, Yun DJ, Bressan RA
Molecular Cell. 2005 Jan 21;17:1-20.
47. A poxvirus protein forms a complex with left-handed Z-DNA:
crystal structure of a Yatapoxvirus Za bound to DNA
Ha SC, Lokanath NK, Quyen DV, Wu CA, Lowenhaupt K, Rich A*, Kim YG*,
Kim KK* (* co-correspondence)
Proc Natl Acad Sci U S A. 2004 Oct 5;101(40):14367-72.
46. Crystallization and preliminary X-ray crystallographic study of
UDP-glucose pyrophosphorylase (UGPase) from Helicobacter pylori
Kim H, Wu CA, Kim DY, Han YJ, Ha SC, Kim CS, Suh SW, Kim KK
Acta Crystallogr D Biol Crystallography, 2004 Aug;60(Pt 8):1447-9.
45. Pressure activation of the chaperone function of small heat
shock proteins
Toelgyesi F, Bode CS, Smeller L, Kim DR, Kim KK, Heremans K, Fidy J
Cellular and Molecular Biology 2004 June;50(4):361-369.
44. Crystallization and preliminary X-ray crystallographic study of
a leech protease inhibitor guamerin and its complex with bovine
pancreatic chymotrypsin
Kim DR, Kim DY, Chu TTT , Jung KH, Kim KK
Biochimica et Biophysica Acta 2004 Jun 1;1699(1-2):285-7
43. Functional Identification of the SecB Homologue in Methanococcus
jannaschii and Direct Interaction of SecB with Trigger Factor
Ha SC, Lee TH, Cha SS, Kim KK
Biochem Biophys Res Commun 2004 March 19;315(4): 1039-1044.
42. Evidence that the Vaccinia virulence factor E3L binds to Z-DNA
in vivo - implications for development of a therapy for poxvirus
infection.
Kim YG, Lowenhaupt K, Oh DB, Kim KK, Rich A
Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1514-8.
41. Bound water molecule is crucial in initiating auto-catalytic
precursor activation in a N-terminal hydrolase.
Yoon J, Oh B, Kim K, Park J, Han D, Kim KK, Cha SS, Lee D, Kim Y.
J Biol Chem. 2004 Jan 2;279(1):341-347.
40. Position of Pro and Ser near Glu7.32 in the Extracellular Loop 3
of Mammalian and Nonmammalian Gonadotropin-Releasing Hormone (GnRH)
Receptors Is a Critical Determinant for Differential Ligand
Selectivity for Mammalian GnRH and Chicken GnRH-II.
Wang C, Yun O, Maiti K, Oh DY, Kim KK, Chae CH, Lee CJ, Seong JY,
Kwon HB
Molecular Endocrinology 2004 Jan; 18(1): 105-116.
39. Crystal Structure of Osmotin, a Plant Antifungal Protein.
Min K, Ha SC, Hasegawa PM, Bressan RA, Yun D-J, Kim KK.
Proteins: Structure Function and Genetics 2004 Jan 2;54(1): 170
-173.
38. Crystal structure of ClpX molecular chaperone from Helicobacter
Pylori
Kim DY, Kim KK
J Biol Chem. 2003 Dec 12;278(50):50664-70.
37. Purification, crystallization and preliminary X-ray studies of
ClpX from Helicobacter Pylori
Kim DY, Wu CA, Kim DR, Ha SC, Han Y-H, Kim KK
Acta Crystallogr D Biol Crystallogr. 2003 Sep 1; 59(9): 1642-1644.
36. Activation mechanism of HSP16.5 from Methanococcus jannaschii
Kim DR, Lee I, Ha SC, Kim KK
Biochem Biophys Res Commun 2003 August 8;307(4): 991-998.
35. On the mechanism of chaperone activity of the small heat-shock
protein of Methanococcus jannaschii
Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S,
Kim SH.
Proc Natl Acad Sci U S A 2003 Jul 8; 100(14): 8151-8155.
34. Crystal structure of the protease domain of a heat-shock protein
HtrA from Thermotoga maritima
Kim DY, Kim DR, Ha SC, Lokanath NK, Lee CJ, Hwang HY, Kim KK
J Biol Chem 2003 Feb 21; 278(8); 6543-6551
33. Dynamic and clustering model of bacterial chemotaxis receptors:
Structural basis for signaling and high sensitivity
Kim S-H, Wang W, Kim KK
Proc. Natl. Acad. Aci. USA 2002 Sep 3;99(18):11611-5.
32. Cloning, purification, crystallization and preliminary X-ray
studies of RFC boxes II-VIII of replication factor C from
Methanococcus jannaschii
Lee I, Lokanath NK, Min K, Ha SC, Kim DY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2002 Mar;58(Pt 3): 519-521
31. Crystallization and preliminary X-ray studies of the protease
domain of the heat shock protein HtrA from Thermotoga maritima
Kim DY, Kim KK
Acta Crystallogr D Biol Crystallogr. 2002 Jan; 58(Pt 1): 170-172
30. Crystal structure of the MJ0490 gene product of the
hyperthermophilic archaebacterium Methanococcus jannaschii, a novel
member of the lactate/malate family of dehydrogenases.
Lee BI, Chang C, Cho SJ, Eom SH, Kim KK, Yu YG, Suh SW.
J Mol Biol 2001 Apr 13;307(5):1351-62
29. Crystallization and preliminary crystallographic studies of
an antimicrobial protein from Pharbitis nil
Ha SC, Min K, Koo C, Kim Y, Yun DJ, Cho MJ, Kim KK
Acta Crystallogr D Biol Crystallogr. 2001 Feb;57(Pt 2):263-265.
28. Nucleoside diphosphate kinase from the hyperthermophilic
archaeon methanococcus jannaschii: overexpression, crystallization
and preliminary X-ray crystallographic analysis.
Min K, Song HK, Chang C, Lee JY, Eom SH, Kim KK, Yu YG, Suh SW
Acta Crystallogr D Biol Crystallogr. 2000 Nov;56 (Pt 11):1485-7.
27. Crystallization and preliminary X-ray diffraction analysis of
Saccharomyces cerevisiae ygr203p, a homologue of acr2 arsenate
reductase.
Moon J, Kim YS, Lee JY, Cho SJ, Song HK, Cho JH, Kim BM, Kim KK, Suh
SW.
Acta Crystallogr D Biol Crystallogr. 2000 Jun;56 (Pt 6):778-80.
26. Crystal Structure of the Ribosome Recycling Factor from
Escherichia coli.
Kim KK, Min S, Suh SW.
EMBO J. 2000 May 15;19(10), 2362-2370.
25. Crystal structure of a fibrillarin homologue from Methanococcus
jannaschii, a hyperthermophile, at 1.6 A resolution.
Wang H, Boisvert D, Kim KK, Kim R, Kim SH.
EMBO J. 2000 Feb 1;19(3):317-23.
24. Crystallization and Preliminary Crystallographic Studies of
Ribosome Recycling Factor from Escherichia coli.
Yun J, Kim W, Ha SC, Eom SH, Suh SW, Kim KK.
Acta Crystallogr D Biol Crystallogr. 2000 Jan;56(Pt 1):84-5.
23. Four Helical-Bundle Structure of the Cytoplasmic Domain of a
Serine Chemotaxis Receptor.
Kim KK, Yokota H, & Kim S-H.
Nature. 1999 Aug 19;400(6746):787-92.
22. Structure-Based Assignment of the Biochemical Function of a
Hypothetical Protein: a Test Case of Structural Genomics.
Zarembinski TI, Hung LW, Mueller-Dieckmann HJ, Kim KK, Yokota H, Kim
R, Kim SH.
Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15189-93.
21. Crystal Structure of Eukaryotic Translation Initiation Factor 5A
from Methanococcus janaschii at 1.8 A Resolution.
Kim KK, Hung LW, Yokota H, Kim R, Kim SH.
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10419-24.
20. Crystal Structure of a Small Heat-Shock Protein.
Kim KK, Kim R, Kim SH.
Nature. 1998 Aug 6;394(6693):595-9.
19. Small Heat Shock Protein of Methanococcus janaschii, a
Hyperthermophile.
Kim R, Kim KK, Yokota H, Kim SH.
Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9129-33.
18. Electron Transfer by Domain Movement in Cytochrome bc1.
Zhang Z, Huang L, Shulmeister VM, Chi YI, Kim KK, Hung LW, Crofts
AR, Berry EA, Kim SH.
Nature. 1998 Apr 16;392(6677):677-84.
17. Purification and Preliminary X-ray Crystallographic Data of
Small Heat Shock Protein Homolog from Methanococcus jannaschii, a
Hyperthermophile.
Kim KK, Yokota H, Santoso S, Lerner D, Kim R, Kim SH.
J Struct Biol. 1998 Jan;121(1):76-80.
16. Crystal Structure of Carboxylesterase from Pseudomonas
fluorescens: an Hydrolase Fold with Broad Substrate Specificity.
Kim KK, Song HK, Shin DH, Hwang KY, Choe S, Yoo OJ, Suh SW.
Structure. 1997 Dec 15;5(12):1571-84.
15. High Resolution Crystal Structures of 5-3-Ketosteroid Isomerase
with and without a Reaction Intermediate Analogue.
Kim, S. W. Cha, S.-S., Cho, H.-S., Kim, J.-S., Ha, N.-C., Cho,
M.-J., Joo, S., Kim, K. K., Choi, K. Y. & Oh, B.-H. (1997)
Biochemistry 36, 14030-14036.
14. Cloning, Expression and Crystallization of a Hyperthermophile
Protein that is Homologous to the Eukaryotic Translation Initiation
Factor, eIF5A.
Kim KK, Yokota H, Kim R, Kim SH.
Protein Sci. 1997 Oct;6(10):2268-70.
13. The Crystal Structure of a Triacylglycerol Lipase from
Pseudomonas cepacia Reveals a Highly Open Conformation in the
Absence of a bound Inhibitor.
Kim KK, Song HK, Shin DH, Hwang KY, Suh SW.
Structure. 1997 Feb 15;5(2):173-85.
12. Three-dimensional Structure of Human Cyclin H, a Positive
Regulator of the CDK-Activating Kinase (Cover Article).
Kim KK, Chamberlin HM, Morgan DO, Kim SH.
Nat Struct Biol. 1996 Oct;3(10):849-55.
11. High-resolution Crystal Structure of the Non-Specific
Lipid-Transfer Protein from Maize Seedlings.
Shin DH, Lee JY, Hwang KY, Kim KK, Suh SW.
High-resolution crystal structure of the non-specific lipid-transfer
protein from maize seedlings.
10. Crystallization, Molecular Replacement Solution, and Refinement
of Tetrameric -amylase from Sweet Potato.
Cheong, C. G., Eom, S. H., Chang, C., Shin, D. H., Song, H. K., Min,
K., Moon, J. H., Kim, K. K., Hwang, K. Y., & Suh, S. W. (1995)
Proteins: Struct. Funct. Genet. 21, 105-117.
9. Crystallization and Preliminary X-ray Crystallographic Study of
Ribosome-Inactivating Protein from Barly Seeds.
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1994)
Acta. Crystallogr. D50, 910-912.
8. Crystallization and Preliminary X-ray Crystallographic Analysis
of Phospholipid Transfer Protein from Maize Seedlings.
Shin, D. H., Hwang, K. Y., Kim, K. K., Kim, S., Sweet, R. M., & Suh,
S. W. (1994)
Proteins: Struct. Funct. Genet. 19, 80-83.
7. Crystallization and Preliminary X-ray Crystallographic Analysis
of Chitinase from Barley Seeds.
Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1993)
Proteins: Struct. Funct. Genet. 17, 107-109.
6. Crystallization and Preliminary X-ray Crystallographic Study of
the Protease Inhibitor Ecotin.
Shin, D. H., Hwang, K. Y., Kim, K. K., Lee, H. R., Lee, C. S.,
Chung, C. H., & Suh, S. W. (1993)
J. Mol. Biol. 229, 1157-1158.
5. Crystallization and Preliminary X-ray Crystallographic Study of
Probable Amylase/Protease Inhibitor-B from Rice Seeds.
Hwang, K. Y., Kim, K. K., Min, K., Eom, S. H., Yu, Y. G., Kim, S.,
Sweet, R. M., & Suh, S. W. (1993)
J. Mol. Biol. 229, 255-257.
4. Crystallization and Preliminary X-ray Crystallographic Study of
-Amylase from Bacillus subtilis.
Chang, C. S., Kim, K. K., Hwang, K. Y., Choi, M. U., & Suh, S. W.
(1993)
J. Mol. Biol. 229, 235-238.
3. Crystallization and Preliminary X-ray Crystallographic Study of
Carboxylesterase from Pseudomonas fluorescens.
Kim, K. K., Hwang, K. Y., Jang, W. H., Lee, H., Yoo, O. J., Choi, M.
U., & Suh, S.W. (1993).
Arch. Biochem. Biophys. 302, 417-419.
2. Crystallization and Preliminary X-ray Crystallographic Study of
Arylesterase from Pseudomonas fluorescens.
Kim, K. K., Hwang, K. Y., Choi, K. D., Kang, J. H., Yoo, O. J., &
Suh, S. W. (1993)
Proteins: Struct. Funct. Genet. 15, 213-215.
1. Crystallization and Preliminary X-ray Crystallographic Study of
Lipase from Pseudomonas cepacia.
Kim, K. K., Hwang, K. Y., Jeon, H. S., Kim, S., Sweet, R. M., Yang,
C. H., & Suh, S. W. (1992)
J. Mol. Biol. 227, 1258-1262.
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full
list : Korean Journals
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11. Structure and function of HtrA family proteins, the key players in
protein quality control.
Kim DY, Kim KK.
J Biochem Mol Biol. 2005 May 31;38(3):266-74.
10.단백질결정학을 이용한 구조단백질체학(structural proteomics) 연구
생화학뉴스 2001년12호, 김경규
9. 화학에서 출발한 생체고분자의 성질 및 구조 연구방법 (김경규)
화학세계, 2000년 11월 9-12 (40권 11호)
(생명과학속의 화학 중, 유연규, 유재훈, 권병목, 김경규, 백승렬, 이건형)
8. Crystal Structure of Thermostable a-Amylase from
Bacillus licheniformis Refined at 1.7 A resolution.
Hwang, K. Y., Song, H. K., Chang, C., Lee, J., Lee, S. Y., Kim, K.
K., Choe, S., Sweet, R. M. & Suh, S. W. (1997)
Mol. Cells 7, 251-258.
7. Crystallization of '20S' Proteasome from Rat Liver.
Hwang, K. Y., Kim, K. K., Chung, C. H., Tanaka, K., & Suh, S. W.
(1994)
Mol. Cells 4, 273-275.
6. Crystallization and Preliminary X-ray Analysis of Probable
Amylase/Protease Inhibitor-A from Rice Seeds.
Min, K., Hwang, K. Y., Kim, K. K., & Suh, S. W. (1994)
Mol. Cells 4, 221-223
5. Crystallization and Preliminary X-ray Analysis of Yeast
Alcohol Dehydrogenase.
Jeon, H. S., Hwang, K. Y., Shin, D. H., Kim, K. K., & Suh, S. W.
(1994)
Mol. Cells 4, 63-65.
4. Crystallization of g-Glutamylcysteine Synthase from
Escherichia coli.
Hwang, K. Y., Kim, K. K., Nam, Y. S., Kwak, J. H., Lee, S. Y., &
Suh, S. W. (1993)
Korean J. Cryst. 4, 99-103.
3. Cystallization and Preliminary X-ray Crystallographic Study
of Kunitz-Type Soybean Trypsin Inhibitor.
Lee, J. K., Song, H. K., Hwang, K. Y., Kim, K. K., & Suh, S. W.
(1993).
Mol. Cells 3, 335-337.
2. The Effect of b-Octyl Glucoside on the Crystallization of
Hen Egg White Lysozyme.
Lee, S. Y., Kim, K. K., Park, K. D., Hwang, K. Y., & Suh, S. W.
(1992).
Mol. Cells 2, 47-51.
1. Purification and Characterization of Probable
Amylase/Protease Inhibitor-B from Rice Seeds.
Park, K. D., Hwang, K. Y., Lee, S. Y., Kim, K. K., Eom, S. H.,
Chung, C. H., Fowler, A., & Suh, S. W. (1991)
Korean Biochem. J. 24, 308-314.
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