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Z-DNA research Lab
DNA links
RNA Databases:
Comparative & Phylogenetic Databases:
- COG: Phylogenetic classification of proteins
- DHMHD: Human-mouse homology database
- HomoloGene: Gene homologies across species
- Homophila: Human disease to Drosophila gene database
- HOVERGEN: Database of homologous vertebrate genes
- TreeBase: A database of phylogenetic knowledge
- XREF: Cross-referencing with model organisms
SNPs, Mutations & Variations Databases:
- ALPSbase: Database of mutations causing human ALPS
- dbSNP: Single nucleotide polymorphism database at NCBI
- HGVbase: Human Genome Variation database
Alternative Splicing Databases:
- ASAP: Alternate splicing analysis tool at UCLA
- ASG: Alternate splicing gallery
- HASDB: Human alternative splicing database at UCLA
- AsMamDB: alternatively spliced genes in human, mouse and rat
- ASD: Alternative splicing database at CSHL
Specialised Databases:
- ABIM: Links to several genomics database
- ACUTS: Ancient conserved untranslated sequences
- AGSD: Animal genome size database
- AmiGO: The Gene Ontology database
- ARGH: The acronym database
- ASDB: Database of alternatively spliced genes
- BACPAC: BAC and PAC genomic DNA library info
- BBID: Biological Biochemical image database
- Cardiac gene database:
- CHLC: Genetic markers on chromosomes
- COGENT: Complete genome tracking database
- COMPEL: Composite regulatory elements in eukaryotes
- CUTG: Codon usage database
- dbEST: Database of expressed sequences or mRNA
- dbGSS: Genome survey sequence database
- dbSTS: Sequence tagged sites (STS)
- DBTSS: Database of transcriptional start sites
- DOGS: Database of genome sizes
- EID: The exon-intron database - Harvard
- Exon-Intron: Exon-Intron database - Singapore
- EPD: Eukaryotic promotor database
- FlyTrap: HTML based gene expression database
- GDB: The genome database
- GenLink: Resources for human genetic and telomere research
- GeneKnockouts: Gene knockout information
- GENOTK: Human cDNA database
- GEO: Gene expression omnibus NCBI
- GOLD: Information on genome projects around the world
- GSDB:The Genome Sequence DataBase
- HGI: TIGR human gene index
- HTGS: High-through-put genomic sequence at NCBI
- IMAGE: The largest collection of DNA sequences clones
- IMGT: The international ImMunoGeneTics information system
- IPCN: Index to Plant Chromosome Numbers database
- LocusLink: Single query interface to sequence and genetic loci
- TelDB: The telomere database
- MitoDat: Mitochondrial nuclear genes
- Mouse EST: NIA mouse cDNA project
- MPSS: Searchable databases of several species
- NDB: Nucleic acid database
- NEDO: Human cDNA sequence database
- NPD: Nuclear protein database
- Oomycetes DB: Oomycetes database at Virginia Bioinformatics Institute
- PLACE: Database of plant cis-acting regulatory DNA elements
- RDP: Ribosomal database project
- RDB: Receptor database at NIHS, Japan
- Refseq: The NCBI reference sequence project
- RHdb: Radiation hybrid physical map of chromosomes
- SHIGAN: SHared Information of GENetic resources, Japan
- SpliceDB: Canonical and non-canonical splice site sequences
- STACK: Consensus human EST database
- TAED: The adaptive evolution database
- TIGR: Curated databases of microbes, plants and humans
- TRANSFAC: The Transcription Factor Database
- TRRD: Transcription Regulatory region database
- UniGene: Cluster of sequences for unique genes at NCBI
- UniSTS: Nonredundent collection of STS
Data bases
Major sequence data bases
- DDBJ: DNA databank of Japan
- EMBL: Maintained by EMBL
- GenBank: Maintained by NCBI
protein data bases
- Cath: Protein structure classification
- HIV Protease: HIV protease database 3D structure
- PDB: 3-D macromolecular structure data
- PSI: Protein structure initiative
- S2F: Structure to function project
- Scop: Structural Classification of Proteins
- BLOCKS: Multipe aligned segments of conserved protein regions
- CCD: Conserved domain database and search service
- DOMO: Homologous protein domain families
- Pfam: Database of protein domains and HMMs
- ProDom: Protein domain database
- Prints: Protein motif fingerprint database
- Prosite: Database of protein families and domains
- SMART: Simple modular architecture research tool
- TIGRFAM: Protein families based on HMMs
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